| School | Grades | Population | Address - click for map | Phone |
| Cartoogechaye Elementary (details) | K-5 | 345 | 3295 Old Murphy Road, Franklin, NC 28734 | (828) 524–2845 |
| Cowee Elementary (details) | 3-5 | 178 | 51 Cowee School Drive, Franklin, NC 28734 | (828) 524–2938 |
| Cullasaja Elementary (details) | K-5 | 185 | 145 River Rd, Franklin, NC 28734 | (828) 524–2744 |
| East Franklin Elementary (details) | K-5 | 313 | 100 Watauga St, Franklin, NC 28734 | (828) 524–3216 |
| Franklin High (details) | 9-12 | 1067 | 100 Panther Drive, Franklin, NC 28734 | (828) 524–6467 |
| Highlands School (details) | K-12 | 413 | Po Box 940, Highlands, NC 28741 | (828) 526–2147 |
| Iotla Elementary (details) | K-2 | 157 | 1166 Iotla Church Rd, Franklin, NC 28734 | (828) 524–2552 |
| Macon County Middle (details) | 6-8 | 833 | 1345 Wells Grove Rd, Franklin, NC 28734 | (828) 524–3766 |
| Nantahala School (details) | K-12 | 119 | 213 Windingstairs Rd, Topton, NC 28781 | (828) 321–4388 |
| South Macon Elementary (details) | K-5 | 524 | 855 Addington Bridge Road, Franklin, NC 28734 | (828) 369–0796 |
